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(1) The Old Days |
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X-ray crystallography began in the Department of Chemistry in 1981
with the purchase of a Philips X-ray generator and a Stoe
Weissenberg camera as a result of Professor Field's efforts. The
first structure to be solved was that of [Fe2(m-Br)(m-P(OMe)2NEtP(OMe)2)]BF4
using intensity data collected at the old CSIR in Pretoria on a
4-circle Philips X-ray diffractometer after carrying out the
photography at UNP. At that time, the only diffractometer in South
Africa was the one administered by Jeff Gaffner in the NPRL
(National Physics Research Laboratory). Current students should
note that data were submitted on cards with 1 instruction line per
card and that relatively small least-squares refinements typically
took 40 h of CPU time on the old mainframe. Imagine the
frustrations if, for some reason, the computer lost the information
during the course of running such a long job!
The biggest problem in doing X-ray structures in the early '80s in
South Africa was that low-temperature facilities did not exist.
Unstable samples (e.g., those with included volatile solvent
molecules such as CH2Cl2) simply could not be
examined. Prof. Field recalls having to take a sample of relatively
unstable crystals of a Ru=Ru bimetallic complex personally by air in
liquid nitrogen to the NPRL in order to get a fast (low-resolution)
structure of the complex. Fortunately, as we all know, Oribi
airport is 2.5 km from the Chemistry Department, so transport time
could be minimized (at least in Natal).
Plotting of the crystal structures in the old days was done with the
original version of ORTEP on the mainframe computer in the Science
Building (yes, we did not have an abundance of workstations in
Chemistry in those days). However, the only available plotter was
located 1 km away in the Faculty of Agriculture! So, not only did 4
least-squares cycles of refinement take 40 h, but also the printout
had to be retrieved from a plotter 1 km away! (Sounds like the dark
ages!)
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(2) The CAD4 Days |
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In 1986, with the
assistance of the NRF and the UN, an
Enraf-Nonius CAD4 single
crystal X-ray diffractometer was purchased for R600,000. This was the 3rd
instrument of its kind in South Africa at the time (the others were at
WITS and UCT). The first operator of the CAD4 at UNP was
Karen nee
Edwards, who since obtained a PhD in protein crystallography at a cancer
research institute attached to the University of London’s Hammersmith
Hospital. When she left to start her PhD work, Niyum Ramesar took her
position for ca. 10 years. Niyum left UNP in 1999 with an MSc in
Inorganic Chemistry and is currently the scientific officer in charge of
the neutron diffraction facility at Pelindaba outside Pretoria.
The CAD4 ran for 12
years at room temperature. Unstable samples simply perished, or were done
at WITS with their low-temperature facility. In 1998, however, we
obtained a Bruker LT3 low-temperature attachment and fitted it to the
CAD4. Several new people became heavily involved in low-temperature
crystallography at UNP, namely Martin Watson,
James Ryan, and Dr.
Orde Munro.
Routine determination of low-temperature structures became possible and
the facility was operated at ca. -80 °C or lower. Users at the Durban and
Pietermaritzburg campuses can certainly attest to the positive impact that
low-temperature crystallography has made on their research efforts since
1998. |
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The
most significant problem with the CAD4, now in its 18th year of
operation despite increasingly frequent electronic faults and other
age-related problems, is that as a serial diffractometer, which measures
each reflection individually in reciprocal space, data collections are
slow. The typical data collection time is 3-12 days, depending on the
size of the unit cell. We were therefore averaging 4 or 5 structures a
month over the period 1998-2001 and always had a backlog of samples of
between 5 and 20 crystal specimens! Moreover, even with a 3 kW long fine
focus tube, some small molecule crystal samples (notably
metalloporphyrins) were close to impossible analyze as a result of
intrinsically weak scattering power. Many data sets could be solved but
not refined to completion owing to the lack of high angle data. Indeed,
biological samples with large unit cells (e.g., proteins) cannot be done
on the CAD4.
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(3) The Present |
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Efforts to garner
funding for a sensitive and fast area detector (CCD) diffractometer began
in about 1998. In 2002, the University was able to put up 100% of the
funding needed to purchase a new diffractometer. The Chemistry Department
owes uncountable thanks to the fund-raising efforts of
Professors A. Bawa
and S. Karim and their unwavering support for high-caliber research at the
University. The new X-ray diffractometer has undoubtedly breathed new
life into research in all areas of chemistry at UNP, particularly since
good structures can now be obtained even from relatively poor crystal
specimens, such as natural products and bioinorganic compounds.
The situation in X-ray
crystallography at the University of Natal is now very different. The
Xcalibur 2 CCD
diffractometer from Oxford Diffraction is an instrument of outstanding
design and craftsmanship. Moreover, we now have one of the best low-temperature
facilities in the country and routinely run ALL samples at -173 °C. At
these low temperatures, thermal motion is highly damped and all atoms can
be located with higher accuracy. The instrument is fitted with a 3 kW
ceramic X-ray tube and fiber optic collimators that focus the
high-intensity X-ray source on the crystal specimen. The sensitive CCD
detector and advanced electronics give high-quality data at even modest
X-ray power. Typical data collection times are now in the range 4-14 h,
depending on the diffracting power of the crystal specimen under study.
Since the CCD detector can be located at any distance from 45-110 mm from
the crystal sample, we can collect data on small proteins and nucleic acid
specimens whose largest cell dimension is < 100 Å.
We now no longer have a
problem with samples in a long queue decaying before the data can be
collected! With the modern software and PC's in our laboratory, full
structure solution and refinement can take as little as 15 minutes for
well-behaved samples. Disordered samples still, however, require some
serious work to solve. Fortunately, the highly redundant data sets
obtained from the CCD diffractometer usually have a high percentage (>
80%) of observed data for a reasonable crystal sample, which gives one a
fair chance at fully resolving disordered structures.
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